Publications

List of publications that acknowledged the NIGMS MMBioS award P41GM103712.

2018    2017      2016      2015     2014    2013


2018

2017

  • Ambler RRuan XMurphy RFWulfing C(2017) Systems Imaging of the immune synapseMethods Mol BiolTRD3 in press

  • Bahar IJernigan RDill K(2017) Protein Actions: Principles & Modeling. New York, NY: Garland Science, Taylor & Francis Group ISBN: 9780815341772

  • Beaven AHMaer AMSodt AJRui HPastor RWAndersen OSIm W(2017) Gramicidin A Channel Formation Induces Local Lipid Redistribution I: Experiment and SimulationBiophysical Journal112:1185-1197. doi: 10.1016/J.BPJ.2017.01.028.

  • Cheng MHKaya CBahar I(2017)A Quantitative Assessment of the Energetics of Dopamine Translocation by Human Dopamine TransporterJ Phys Chem B DOI: 10.1021/acs.jpcb.7b10340 PMID: 29232131
  • Cheng MHGarcia-Olivares JWasserman SDiPietro JBahar I(2017) Allosteric modulation of human dopamine transporter activity under conditions promoting its dimerizationThe Journal of biological chemistry292:12471-12482. doi: 10.1074/jbc.M116.763565. PMID:28584050

  • Cheng MHTorres-Salazar DGonzalez-Suarez ADAmara SGBahar I(2017) Substrate transport and anion permeation proceed through distinct pathways in glutamate transporterseLife6:. doi: 10.7554/eLife.25850. PMID:28569666

  • Chong LTSaglam ASZuckerman DM(2017) Path-sampling strategies for simulating rare events in biomolecular systemsCurrent Opinion in Structural Biology43:88-94. doi: 10.1016/j.sbi.2016.11.019. PMID:27984811 TRD1

  • Gaieb ZMorikis D(2017) Conformational heterogeneity in CCR7 undergoes transitions to specific states upon ligand bindingJournal of Molecular Graphics and Modelling74:352-358. doi: 10.1016/J.JMGM.2017.04.012.

  • Gaieb ZMorikis D(2017) Detection of Side Chain Rearrangements Mediating the Motions of Transmembrane Helices in Molecular Dynamics Simulations of G Protein-Coupled ReceptorsComputational and Structural Biotechnology Journal15:131-137. doi: 10.1016/J.CSBJ.2017.01.001.

  • Gretzmeier CEiselein SJohnson GREngelke RNowag HZarei MKűttner VBecker ACRigbolt KTGHøyer-Hansen MAndersen JSMűnz CMurphy RFDengjel J(2017) Degradation of protein translation machinery by amino acid starvation-induced macroautophagyAutophagyTRD3 in press

  • Gur MCheng MHZomot EBahar I(2017) Effect of Dimerization on the Dynamics of Neurotransmitter: Sodium SymportersThe Journal of Physical Chemistry Bacs.jpcb.6b09876. doi: 10.1021/acs.jpcb.6b09876. DBP1 TRD1

  • Huang YMRaymundo MAVChen WChang CA(2017) Mechanism of the Association Pathways for a Pair of Fast and Slow Binding Ligands of HIV-1 ProteaseBiochemistry56:1311-1323. doi: 10.1021/acs.biochem.6b01112.

  • Johnson GRKangas JDDovzhekno ATrojok RVoigt KMajarian TDPalme KMurphy RF(2017) A Method for Characterizing Phenotypic Changes in Highly Variable Cell Populations and its Application to High Content Screening of Arabidopsis thaliana ProtoplastsCytometry Part ACSP12 TRD3 in press

  • Kagan VEMao GQu FAngeli JPDoll SCroix CSDar HHLiu BTyurin VARitov VBKapralov AAAmoscato AAJiang JAnthonymuthu TMohammadyani DYang QProneth BKlein-Seetharaman JWatkins SBahar IGreenberger JMallampalli RKStockwell BRTyurina YYConrad MBayir H(2017)Oxidized Arachidonic and Adrenic Phosphatidylethanolamines Navigate Cells to Ferroptosis NatureChem Biol13:81-90 PMID: 27842066

  • Li HSharma NGeneral IJSchreiber GBahar I(2017)Dynamic Modulation of Binding Affinity as a Mechanism for Regulating Interferon SignalingJ Mol Biol429:2571-2589 PMID: 28648616

  • Li HChang YYLee JYBahar IYang LW(2017)DynOmics: dynamics of structural proteome and beyondNucleic Acids Res45:W374–W380 PMID: 28472330

  • Liao CZhao XBrewer MMay VLi J(2017) Conformational Transitions of the Pituitary Adenylate Cyclase-Activating Polypeptide Receptor, a Human Class B GPCRScientific Reports7:5427. doi: 10.1038/s41598-017-05815-x.

  • Liu BOltvai ZBayir HSilverman GPak SPerlmutter DBahar I(2017) Quantitative Assessment Of Cell Fate Decision Between Autophagy And ApoptosisbioRxiv129767. doi: 10.1101/129767.

  • Ma SCheng MHGuthrie DANewman AHBahar ISorkin A(2017)Targeting of dopamine transporter to filopodia requires an outward-facing conformation of the transporterSci Rep7:5399 PMID: 28710426

  • Mikulska-Ruminska KKulik AJBenadiba CBahar IDietler GNowak W(2017)Nanomechanics of multidomain neuronal cell adhesion protein contactin revealed by single molecule AFM and SMDSci Rep7:8852 PMID: 28821864

  • Ramezani HAkan OB(2017) Importance of vesicle release stochasticity in neuro-spike communicationThe Journal of Physical Chemistry B121:3343-3347. doi: 10.1109/EMBC.2017.8037572.

  • Rouviere EArnarez CYang LLyman E(2017) Identification of Two New Cholesterol Interaction Sites on the A 2A Adenosine ReceptorBiophysical Journal113:2415-2424. doi: 10.1016/j.bpj.2017.09.027.

  • Sauerwald NZhang SKingsford CBahar I(2017)Chromosomal dynamics predicted by an elastic network model explains genome-wide accessibility and long-range couplingsNucleic Acids Res45:3663-3673 PMID: 28334818

  • Sekar JAPTapia JJFaeder JR(2017) Automated visualization of rule-based modelsPLOS Computational Biology13:e1005857. doi: 10.1371/journal.pcbi.1005857.

  • Simakov NLeonard DASmith JCWymore TSzarecka A(2017) A Distal Disulfide Bridge in OXA-1 $\beta$-Lactamase Stabilizes the Catalytic Center and Alters the Dynamics of the Specificity Determining $\Omega$ LoopThe Journal of Physical Chemistry B121:3285-3296. doi: 10.1021/acs.jpcb.6b07884.

  • Steinman JEpperly MHou WWillis JWang HFisher RLiu BBahar IMcCaw TKagan VBayir HYu JWipf PLi SHuq MSGreenberger JS(2017)Improved Total-Body Irradiation Survival by Delivery of Two Radiation Mitigators that Target Distinct Cell Death PathwaysRadiat Res DOI: 10.1667/RR14787.1 PMID: 29140165

  • Tyurina YYShrivastava ITyurin VAMao GDar HHWatkins SEpperly MBahar IShvedova AAPitt BWenzel SEMallampalli RKSadovsky YGabrilovich DGreenberger JSBayir HKagan VE(2017)"Only a life lived for others is worth living:" Redox Signaling by Oxygenated Phospholipids in Cell Fate DecisionsAntioxid Redox Signal DOI:10.1089/ars.2017.7124 PMID: 28835115

  • Wenzel SETyurina YYZhao JSt Croix CMDar HHMao GTyurin VAAnthonymuthu TSKapralov AAAmoscato AAMikulska-Ruminska KShrivastava IHKenny EMYang QRosenbaum JCSparvero LJEmlet DRWen XMinami YQu FWatkins SCHolman TRVanDemark APKellum JABahar IBayir HKagan VE(2017)PEBP1 Wardens Ferroptosis by Enabling Lipoxygenase Generation of Lipid Death SignalsCell 171:628-641 PMID: 29053969

  • Zhou ZLuo AShrivastava IHe MHuang YBahar ILiu ZWan Y(2017)Regulation of XIAP Turnover Reveals a Role for USP11 in Promotion of TumorigenesisEBioMedicine15:48-61 PMID: 28040451

  • Zuckerman DMChong LT(2017) Weighted Ensemble Simulation: Review of Methodology, Applications, and SoftwareAnnual Review of Biophysics46:43-57. doi: 10.1146/annurev-biophys-070816-033834.

2016

2015

2014

2013

2012

 

 

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