Ivet Bahar teaching ProDy at CCPBioSim Training Week 2022
Dr. Ivet Bahar and her lab members will be teaching ProDy at the CCPBioSim Training Week 2022 workshop on Tuesday, September 20th. For more information and an up-to-date schedule, please click here.
Tenative schedule:
14:30 – 17:30, Tuesday 20 September
Topic: ProDy
Prerequisites: install ProDy (instructions will be send to registered participants 1 week before)
MMBioS Hands-On Workshop on Computational Biophysics 2022
*This workshop will be held online.
Workshop Dates: July 5-8, 2022
Application Deadline: June 17, 2022
For more details, or to apply visit:
Hands-on Workshop on Computational Biophysics 2022
The Hands-On Workshop on Computational Biophysics is a joint-effort between The NIH Center for Macromolecular Modeling & Bioinformatics at UIUC [www.ks.uiuc.edu] and The National Center for Multiscale Modeling of Biological Systems (MMBioS) [mmbios.org]. Drs. Ivet Bahar (Pitt) and Emad Tajkhorshid (UIUC) will lead the instruction for this interactive 4-day event. The workshop will cover a wide range of physical models and computational approaches for the simulation of biological systems using NAMD, VMD, and ProDy. Space is limited and applications will be accepted until June 17, 2022. This workshop is jointly supported by MMBioS, an NIH Biomedical Technology and Research Resource and the NIH Center for Macromolecular Modeling & Bioinformatics.
MMBioS Cell Modeling Workshop: July 11 - 15, 2022
*This workshop will be held online.
We are proud to announce our latest workshop:
CELL MODELING WORKSHOP
Dates: July 11 - 15, 2022
Application deadline: June 24, 2022
For more details, or to apply visit:
This workshop covers theory and practice for the design and simulation of cell models focused on diffusion-reaction systems such as neurotransmission, signaling cascades, and other forms of biochemical networks.
During the workshop, participants will learn how to use the tools developed by MMBioS to create, run, and analyze models of cellular microphysiology and apply them to their own research questions. The workshop focuses on the following tools:
- The MCell simulation environment, including new Monte Carlo methods for 3-D simulation of reactions in solution and on arbitrarily shaped biological surfaces. The newest version of CellBlender our MCell model creation and visualization framework.
- The BioNetGen software for specifying, simulating, and analyzing biochemical networks using a modular, rule-based approach.
- The CellOrganizer system for creating image-derived models of cell shape and intracellular organization that can be used to compare cell populations and to create cell simulations for diverse cell geometries to explore the effect of variation in cell organization on microphysiology.