Agenda: Computational Methods for Spatially Realistic Microphysiological Simulations 2015
Workshop details: Home Agenda Instructors Evaluations
Monday, April 27 | |
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8:30 - 9:00 | Welcome and Introduction |
9:00 - 10:00 | Introduction to Spatial Modeling with MCell (part 1) (PDF, video) |
10:00 - 10:15 | Break |
10:15 - 11:15 | Introduction to Spatial Modeling with MCell (part 2) (PDF, video) |
11:15 - 12:00 | CellBlender Introduction and Demo (video) |
12:00 - 1:00 | Lunch Break (lunch will be provided) |
1:00 - 5:00 | Hands-on tutorials in PSC's Computer Training Center |
Tuesday, April 28 | |
8:30 - 9:15 | Introduction to Rule-Based Modeling (PDF, video) |
9:15 - 10:15 | Short Talks on Atomizer, Visualization, and Rare Event Sampling Using the Weighted Ensemble Method (PDF, PDF, PDF, video) |
10:15 - 10:30 | Break |
10:30 - 11:15 | Hands-on with RuleBender - Specifying a model, visualization, simulation, parameter scans |
11:15 - 12:00 | Extending rule-based models into space |
12:00 - 1:00 | Lunch Break (lunch will be provided) |
1:00 - 5:00 | Hands-on tutorials in Computer Training Center and/or work on your own projects (PDF) |
Wednesday, April 29 | |
8:30 - 9:30 | Introduction to Generative Modeling with CellOrganizer (PDF, video) |
9:30 - 10:00 | Working with Diffeomorphic Models (PDF, video) |
10:00 - 10:30 | Break |
10:30 - 11:00 | Training of Ratio Model and Protein Patterns |
11:00 - 12:00 | Training of CellOrganizer Models - From Images to Models (PDF, video) |
12:00 - 1:00 | Lunch Break (lunch will be provided) |
1:00 - 5:00 | Hands-on tutorials in Computer Training Center and/or work on your own projects ( PDF ) |