Agenda: Cell Modeling Workshop 2017

Workshop details:   Home   Agenda  Instructors

 

 This agenda is tentative and subject to change.

 

Monday, June 26
8:30 - 9:00 Welcome and Introduction
9:00 - 10:00 Hands-on with CellBlender
10:00 - 10:15 Break
10:15 - 11:15 Basic models with CellBlender
11:15 - 12:00 Advanced models and parameter sweeps with CellBlender
12:00 - 1:00 Lunch Break (lunch will be provided)
1:00 - 2:00 Optimizing geometry with GAMer
3:00 - 5:00 Overview of MDL and pyMCell
   
Tuesday, June 27
8:30 - 9:15 Introduction to Rule-Based Modeling (James Faeder)
9:15 - 10:15 Hands-on intro to RuleBender with basic models
10:15 - 10:30 Break
10:30 - 11:00 Continuing work with RuleBender
11:00 - 12:00 Developing a detailed model of CaMKII activation
12:00 - 1:00 Lunch Break (lunch will be provided)
1:00 - 1:30 Atomizer demo and hands-on
1:30 - 2:00 Visualization demo
2:00 - 2:30 Parameter estimation demo
3:00-5:00 Using MCell-R to perform spatial simulation of rule-based models
   
Wednesday, June 28
8:30 - 9:20 Introduction to Generative Modeling with CellOrganizer
9:20 - 10:00 Working with Diffeomorphic Models
10:00 - 10:30 Break
10:30 - 11:00 Approaches to modeling protein distributions
11:00 - 12:00 Using CellOrganizer through Galaxy
12:00 - 1:00 Lunch Break (lunch will be provided)
1:00 - 5:00 Hands-on tutorials in Computer Training Center and/or work on your own projects

Copyright © 2018 National Center for Multiscale Modeling of Biological Systems. All Rights Reserved.